Resources
Useful links
A few annotated links to forums, repositories for training material, etc
- image.sc: Job-listing, questions and answers in bioimage analysis using open-source software
- BIAflows: A BioImage Analysis workflows benchmarking platform
- Biii: BioImage Informatics Index - annotated list of software, modules, and workflows
- Zenodo: repository and digital archive that allows researchers to store, share, and publish their research data and related materials (free up to 50GB)
- ZeroCostDL4Mic:exploiting Google Colab to develop a free and open-source toolbox for Deep-Learning in microscopy
Journals that focus on bioimage analysis
Educational Content
- Image Processing and Analysis for Life Scientists: MOOC taught by EPFL senior image analysts with longtime work experience in a service-oriented core facility
- NEUBIAS Academy: YouTube videos teaching tools and concepts
- NEUBIAS Image Analysis Training Resources: Online material
- Robert Haase’s youtube channel and personal list: General introduction to BioImage analysis. Robert also maintains a very thorough list of online resources.
- Introduction book to Bioimage Analysis: Pete Bankhead is the head of the BioImage Analysis and Digital Pathology group in Edinburgh and the original developer of QuPath